What:
    beast2phy.pl with helper scripts (.tgz file)

Version:
    04/15/2008 01:53:14 PM CEST
    04/26/2011 12:50:44 PM CEST

By:
    Johan Nylander
    jnylander @ users.sourceforge.net

Usage:
    beast2phy.pl [--format=<nex|altnex|mb|phy> --decimals=N --outfile=OUTFILE]  INFILE
    beast2mb INFILE
    beast2altnex INFILE
    beast2newick INFILE

Description:
    Scripts to convert the output from BEAST/TreeAnnotator to formats
    readable by other software.

Files:
    beast2phy.pl    -- the main Perl script for MCMC sampled trees. Try 'beast2phy.pl --help'
    beast2mb        -- beast to "strict" MrBayes output
    beast2altnex    -- beast to alt nexus (no translation table)
    beast2newick    -- beast to newick (phylip) format
    trees.txt       -- example beast file
    trees2.txt      -- example beast file
    trees.con       -- example beast file

Installation:
    Put all files in the PATH (e.g., /usr/local/bin)

Warning:
    The script can be VERY slow on large files (e.g., minutes on a 250 MB tree file)